MLML Students Win National Geographic Competition

Blogging their way to an ROV

Moss Landing Marine Lab's very own Miya Pavlock-McAuliffe and Marcel Peliks entered a contest with National Geographic's Open Explorers S.E.E Initiative and they won a remotely operated vehicle from Open ROV. Over the past few months they've been blogging about their mission to discover the shallow areas of the Monterey Submarine Canyon via multibeam sonar and scientific instrumentation to learn about the geologic processes that shape the Monterey Bay and understand how the features themselves influence the vibrant Monterey Bay ecosystem. The blog takes you on the journey of two scientists going through trial and error to seek new information.

Several researchers at MLML will have the opportunity to use this ROV for their studies. These two Geological Oceanographers aim to study massive submarine landslides, or mass gravity flows, that periodically occur at the edges of the canyon and have been shown to move sand, mud, and rocks miles into the deep. We aren't sure why they happen as they aren't linked to earthquakes or storms. They plan to use the ROV to survey the head of the canyon frequently, in order to observe if the timing of mass gravity flows in the canyon are connected to the longshore sediment transport system: do build ups in sediment moved from the beach to offshore cause these flows?

Of course these students owe a huge thank you Ivano Aiello for support throughout this process and to QPS for donating the software to process their preliminary multibeam data, without which none of this would've been possible.

Our New Aquaculture Program at MLML


Possibly some of you are aware of the statistics from the FAO report that are contained in the “State of World Fisheries and Aquaculture”:

  • 31% of commercial wild fish stocks are overfished
  • Yet global per capita fish consumption has increased to 20kg annually
  • Minimal increase in wild caught seafood since 1980 (see graph below)
  • But an exponential increase in seafood consumption worldwide since 1980
  • All this increased capacity for seafood is from aquaculture

Worldwide production of aquaculture and wild-caught seafood from 1950 to 2010. (FAO 2012)

Because of the increased demand for seafood but the environmental, political, and social concerns regarding former aquaculture practices it was apparent to us that MLML could play a key role in helping to establish sustainable, healthy, and productive aquaculture practices for California and elsewhere.

So, on the old shorelab site we have built a new Aquaculture Facility at MLML with funding from the Packard Foundation and our own internal funds. San José State University also provided financial support and managed the project, with the new building dedicated on 22 August 2014 (Figure below).

We are rapidly expanding our aquaculture and seawater capacity by:

  • Increasing the amount of seawater we pump from 300 gallons per minute (GPM) to 450 GPM with financial assistance from MBARI who also receives a portion of the seawater.
  • Adding 24 new 200-gallon tanks to investigate the potential for seaweeds to mitigate the effects of ocean acidification on shellfish growth (funding from CA Sea Grant to Mike Graham and Scott Hamilton)
  • Adding a new trailer with computer controls to allow precise control of pH in 20 new tanks to assess the impacts of changing ocean acidification on rockfishes (funding from NSF to Scott Hamilton).
  • With funding from Anthopocene Institute and a collaboration with Kerstin Wasson (Elkhorn Slough National Estuarine Research Reserve) we have started a hatchery for the native Olympia Oyster with the intent of restocking impacted populations of this oyster in Elkhorn Slough and possibly later in San Francisco Bay. Use this link to read more:

Opening of the aquaculture facility at the shore lab at MLML.

One of the exciting developments regarding adding new aquaculture expertise at MLML involves the hiring of Dr. Luke Gardner, a new California Sea Grant Extension Specialist in aquaculture (photo below). Luke received his Ph.D. from Queensland University of Technology in Australia, and most recently was a postdoc with Barbara Block’s lab at Hopkins Marine Station.  Luke will be teaching courses in aquaculture, advising students, and conducting research in addition to his duties as a Sea Grant Extension Specialist.  More info:

Dr. Luke Gardner

Luke’s research interests broadly involve the development of sustainable aquaculture. Specifically, in working with industry to apply advanced and emerging technologies to help solve issues limiting aquaculture growth. Luke has used biotechnology to study physiological systems in marine organisms including reproduction, bio-mineralization, toxicology, and nutrition.  Current research interests include: (1) using high-throughput sequencing and bio-informatics to develop biomarkers for valuable traits in cultured aquatic organisms, and (2) development of alternative fish-free feeds. He has experience with fishes, shellfish, and seaweeds.

We have a number of industry partners using the facility and supporting MLML graduate students:

  • Monterey Abalone Company is using our facilities for their hatchery and nursery before the young abalone are sent off to their Monterey farm for grow out.
  • Monterey Bay Seaweeds farms a number of sustainable seaweed species at the MLML Aquaculture Facility that then make their way to high end restaurants along the west coast.
  • Anago-USA has tanks at MLML housing hagfish before they are sent off to markets in Korea and elsewhere. They likely also will be funding a number of research projects for students.
  • TwoXSea and Bill Foss have donated an experimental fish-feed mill that will allow us to experiment with the composition of various fish feeds. The ultimate goal is to greatly reduce the amount of fish products used in producing fish meal to the point where we have removed fish entirely from the diet. This mill will be one of only two on the U.S. west coast, and will allow MLML to lead the way in developing fish-free pellets for culturing marine fishes.


We are in the final stages of developing a Center for Aquaculture in collaboration with the San José State University.

The goals of the Center are to:

  • Coordinate the interests and activities of CSU and UC scientists/teachers,
  • Provide research and infrastructure to lead in sustainable aquaculture practices,
  • Help decision-makers with solving issues associated with permitting and management,
  • Assist with policy making regarding responsible aquaculture practices in California and elsewhere, and
  • Provide education and resources for the new entrepreneurs in aquaculture.

We also have plans to develop a curriculum in Aquaculture Science and Practices:

  • Courses in culturing algae, shellfish, and fishes; aquaculture systems, permitting and policy; design and implementation; and entrepreneurship
  • New M.S. degree or certificate in Aquaculture
  • Develop partnerships with other institutions and companies

We expect MLML to help lead the way for sustainable, restorative aquaculture done the right way in California. Check out the MLML Aquaculture Facility website for more information.

MLML Research Faculty named Subject Editor of Harmful Algae

MLML's Holly Bowers named Subject Editor for the scientific journal Harmful Algae

Dr. Holly Bowers, a Research Faculty member at MLML, is now one of the Subject Editors for the scientific journal Harmful Algae. Holly is currently working on harmful algal blooms in coastal California in collaboration with Jason Smith at MLML, collaborators at MBARI and UCSC, and elsewhere.

Holly is excited to join the Editorial Board of Harmful Algae as a Subject Editor. This is her 20th year studying HABs (Harmful Algal Blooms) so she considers it an honor to be part of the third highest ranking publication among more than 100 marine and freshwater biology journals. She recently returned from the International Conference on HAB’s held in Nantes, France where she presented her work: “Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling”. After the meeting, she thoroughly enjoyed exploring the Brittany region with no plans and no reservations!

MLML’s Holly Bowers is Using Exciting New Technology

MLML Researcher Holly Bowers is Using Exciting New Technology!

GenomeWeb recently published an article about Ubiquitome's newest portable qPCR platform.  Ubiquitome is commercializing a 16-well real-time PCR instrument that is aimed at personalizing the method and making it more accessible to researchers. Their new Liberty16 instrument is designed to be easily used in the field. MLML Research Faculty Holly Bowers recently won USC Sea Grant funding from the Ocean Protection Council Proposition 84 to study toxic algae using the Liberty16.

"Bowers' new funding will allow her group to take the Liberty16 into the field, and do PCR 'boatside, or shoreside,' she said, to detect different algae species in the water and to support local stakeholders. Boatside, and even 'tankside' research is much like bedside genomics, in which a clinician runs a test right next to a patient, she said. 'This takes us, as algal scientists, into that realm of thinking.' "

To read more about how researchers are using this new technology you can read the full article here.