Seminars

Tien-Chieh Hung, UC Davis

Moss Landing Marine Labs Seminar Series - November 29th, 2018

Hosted by the Ichthyology Lab

MLML Seminar Room, 4pm

(or Watch it Live here!)

Open to the public

Prof. Tien-Chieh Hung works in the area of aquacultural engineering including computational fluid dynamics, biomimetic particle filtration system design, recirculating culture system design, cultural technique development, and fish behavior. He has been working with listed fish species since 2008 and is Director of the Fish Conservation and Culture Laboratory and manages the refuge population of the delta smelt. His current study is focusing on the fish culture technique improvement, marking method development, domestication effects on the captive fish, and integrated aquaculture.

The development of delta smelt hatchery and the use of cultured fish for conservation purposes

The UC Davis Fish Conservation and Culture Laboratory (FCCL) has started the delta smelt hatchery program since 1996 in response of the decline of their population in Delta. The fish is known for their fragile and sensitive to the environment, and they were federally listed as threatened and as endangered by the state. It took about 10 years for the FCCL to develop a reliable culture method for the delta smelt, and since then, the FCCL has been further developing a genetically managed refuge population of the fish. Currently the FCCL is housing the 11th generation removed from the wild. With the potential need of future reintroduction of delta smelt, the FCCL is now working with collaborators on the fitness of captive fish to the wild.

Susanna Blackwell, Greeneridge Sciences

Moss Landing Marine Labs Seminar Series - November 29th, 2018

Hosted by the Vertebrate Ecology Lab

MLML Seminar Room, 4pm

(or Watch it Live here!)

Open to the public

Dr. Blackwell has been working with large marine vertebrates for nearly 30 years - northern and southern elephant seals, Baltic grey seals, albacore tuna, Atlantic and Pacific bluefin tuna, bowhead whales, and narwhals, to name a few.  In the early stages of her career she was involved in the design and manufacture of several types of seal data loggers, recording parameters such as depth, temperature, heart rate, swim speed, activity levels, and bioluminescence.  She joined Greeneridge in May 2000 and has since collected and analyzed acoustic data on man-made sounds, such as those produced by impact and vibratory pile-driving, airgun pulses, and numerous construction activities, to assess their range and impact on marine vertebrates, mostly marine mammals.  More recently she has combined these two interests—in collecting data using tags and in assessing the effects of man-made sounds on marine animals—to examine how East Greenland narwhals react to sounds from airgun pulses, which are used the world over in seismic exploration for oil and gas.  She is the lead author of 12 refereed journal articles and a co-author in 31 others.  She is a member of the Acoustical Society of America (and a Fellow since 2008), the Society for Marine Mammalogy, and Sigma Xi (National Society for Scientific Research).

What's Next After an MLML Degree?

Moss Landing Marine Labs Seminar Series - December 6th, 2018

Hosted by the Pacific Shark Research Center & Biological Oceanography Lab

MLML Seminar Room, 4pm

Open to the public

A panel discussion about career paths with MLML alumni:

Zan Armstrong, Freelance Data Visualization Engineer

Moss Landing Marine Labs Seminar Series - January 25th, 2018

Hosted by the Phycology Lab

MLML Seminar Room, 4pm

Open to the public

Zan Armstrong is a data visualization engineer and designer. Her work includes creating custom visualizations, both static and interactive, for analysts and scientists to enable them to make new discoveries in their data. She is most interested by identifying what characteristics of the data might be most analytically/scientifically important, and finding ways to reveal those characteristics visually. Zan also enjoys finding other ways to see familiar data that reveals a different perspective or illustrating situations in which the "obvious" understanding of the data is misleading or masks some deeper truth.

Same Data, Different Visual Forms: Data Visualization for Scientific Discovery

Picking the visual form for a data visualization is a decision about what part of our data we care most about. Should we highlight outliers? Focus on the densest parts of the data? Ignore numbers under a certain threshold? Look at values or differences? The right form depends on what we believe is most important to see. Zan Armstrong will describe the thought process behind data-driven design decisions from her work and share her 5 top recommendations for making more effective visualizations for scientific discovery (including code snippets in R and/or Python).

Allen Andrews, NOAA's Pacific Islands Fisheries Science Center

Moss Landing Marine Labs Seminar Series - February 1st, 2018

Hosted by the Ichthyology Lab

MLML Seminar Room, 4pm

Open to the public

Allen Andrews joined the Life History Program of the Pacific Islands Fisheries Science Center in 2009.  He came to Hawaii from Moss Landing Marine Laboratories (MLML) in California where he operated the Age and Longevity Research Laboratory for 12 years.  He earned a M.S. degree in Marine Science from MLML in 1997 and in 2009 he finished a Ph.D. in Ichthyology and Fisheries Science at Rhodes University, South Africa.  His dissertation presented validated age and growth of the Patagonian toothfish (Chilean sea bass) and orange roughy. 

His area of expertise involves age estimation and validation of fishes and invertebrates using growth zone counting and radiochemical techniques (i.e. lead-radium dating) and bomb radiocarbon dating.  Recent works involved bomb radiocarbon dating of several shark species, the endangered white abalone, hawksbill sea turtle, and fishes of Indo-Pacific regions.  Allen's work with the Life History Program at NOAA Fisheries began with applying these techniques to dating opakapaka (Hawaiian pink snapper), and has continued with applications to other fishes of the Hawaiian Archipelago, as well as national and international collaborations on fishes and corals of the Gulf of Mexico, Great Barrier Reef, and Mediterranean. As an Affiliate Faculty member of the Oceanogrpahy Department and the Marine Biology Graduate Program at University of Hawaii, Manoa, Allen has fostered research with students involving deep-sea fishes and tropical snappers. Other interests are with photography, astronomy, and world travel. For more information please visit: “astrofish.me”

Bombs and blue marlin (Makaira nigricans) — confirmation of rapid growth

Longevity of blue marlin (Makaira nigricans) remains unresolved. Use of fin spines and sagittal otoliths for age reading has led to unconfirmed longevity estimates of close to 20 years.  Age validation has been elusive because large individuals are rare and a technique that can be applied to the structures that provide estimates of age was absent. Use of otolith chemical signatures has been limited by sagittal otoliths that are very small—whole otolith mass of adult blue marlin can reach 10 mg for the largest fish. Recent advances in the detection limits of radiocarbon (¹⁴C) with accelerator mass spectrometry—coupled with recently acquired knowledge of marine bomb ¹⁴C signals spanning the tropical Pacific Ocean—have led to an opportunity to age blue marlin from small amounts of otolith material. In this study, otoliths from a recently collected 1245 lb. (565 kg) female blue marlin at 146 inches (3.71 m) lower jaw fork length were analyzed for ¹⁴C. Using a series of deductions in the bomb ¹⁴C dating method the age of this “grander” blue marlin was confirmed.

Danuta Wisniewska, Hopkins Marine Station

Moss Landing Marine Labs Seminar Series - February 8th, 2018

Hosted by the Vertebrate Ecology Lab

MLML Seminar Room, 4pm

Open to the public

Danuta Maria Wisniewska is a bioacoustician and foraging ecologist interested in how marine animals negotiate their surroundings and forage in their heterogeneous and rapidly changing habitats. Her research is centered on fine-scale empirical studies using multi-sensor biologging tags.  Danuta is an oceanographer turned biologist. After an undergrad in oceanography at University of Gdansk in Poland, she completed an Arctic Biology program at the University Centre in Svalbard, Norway. She then joined the Marine Bioacoustics Lab at Aarhus University, Denmark, where she worked on sensory ecology of echolocating toothed whales. After earning her PhD degree, she moved to the Section of Marine Mammal Research at Aarhus University, where she worked on the effects of anthropogenic noise on marine mammals. She is currently a postdoctoral fellow in Jeremy Goldbogen’s lab at Stanford University’s Hopkins Marine Station.

The economies of scale – effects of body size on cetacean foraging

Size dependence of metabolic rate, where smaller animals generally exhibit higher mass-specific  metabolism, is a major factor influencing how animals interact with their environment. Whilst large body size necessitates high absolute energy intake, it also grants low relative rates of energy use per unit body mass and, therefore, many physiological and ecological advantages. Such size-related functional constraints ultimately shape animal behavior, performance and life history. In this talk, I will discuss how these body size trade-offs affect foraging performance of cetaceans, from harbor porpoises to sperm whales and blue whales. I will focus on how biologging technology has enabled us to address this.

Danna Staaf

Moss Landing Marine Labs Seminar Series - February 15th, 2018

Hosted by the Invertebrate Zoology and Molecular Ecology Lab

MLML Seminar Room, 4pm

Open to the public

Danna Staaf fell in love with cephalopods at the age of ten. She began to keep them as pets in a home aquarium, learned to scuba dive in order to meet more of them in the wild, and eventually completed a Ph.D. on squid at Stanford University's Hopkins Marine Station. Her first book, Squid Empire: The Rise and Fall of the Cephalopods, was named one of the best science books of 2017 by NPR Science Friday. She lives in San Jose, California, and works as a freelance science writer and educator.

Anne Dekas, Stanford University

Moss Landing Marine Labs Seminar Series - February 22nd, 2018

Hosted by the Biological Oceanography Lab

MLML Seminar Room, 4pm

Open to the public

Anne Dekas is an Assistant Professor at Stanford University in the Earth System Science Department studying the microbiology and biogeochemistry of the deep sea.  She is broadly interested in how microbial life affects the chemistry and climate of the planet, today and throughout time. Her research combines tools from molecular biology and isotope geochemistry to identify and quantify microbial metabolic capabilities, activity, and interactions, with a focus on understanding uncultured microorganisms in deep-sea water and sediment. Before joining the faculty at Stanford, she was a Lawrence Postdoctoral Fellow at Lawrence Livermore National Laboratory, where she investigated the carbon metabolic flexibility of pelagic marine archaea. She received a Ph.D. in Geobiology from the California Institute of Technology, where she studied nitrogen fixation, methane oxidation and sulfate reduction at deep-sea methane seeps. She received an A.B. in Earth and Planetary Sciences from Harvard University. Originally interested in space sciences, Dekas performed research at three NASA centers (Jet Propulsion Laboratory, Ames Research Center, and Goddard Space Flight Center ) before beginning her Ph.D., and she continues to be interested in the survival strategies of life in extreme environments.

A single-cell view of microbial activity in the deep sea

The deep sea is one of the largest habitats for microbial life on the planet: it covers nearly two thirds of our Earth’s surface and harbors approximately 70% of total marine microorganisms. The activity of microorganisms in the deep sea plays an essential role in biogeochemical cycling, including the production and consumption of greenhouse gases (e.g., CH₄, CO₂ and N₂O), thereby affecting climate. Our knowledge of the diversity and activity of the microorganisms in the environment, including the deep sea, has expanded in recent years with the development of next generation sequencing (e.g., “-omics” methodologies). However, our understanding of trends in microbial activity as a function of phylotype and physicochemical parameters is still lacking, and particularly so in the deep ocean. Closing this gap in our knowledge will increase our understanding of greenhouse gas cycling in the marine environment, and will better equip us to predict the activity of microorganisms in a changing climate. To this end, my group is currently studying: (1) organic substrate utilization by pelagic marine Thaumarchaeota, (2) nitrogen fixation by anaerobic bacteria and archaea in marine sediments, and (3) methane oxidation by syntrophic archaea at methane seeps. In this presentation I will touch on each of these areas of exploration, as well as our recent methodological advances in the use of nanoscale secondary ion mass spectrometry (nanoSIMS) to quantify anabolic activity in uncultured microorganisms on the single-cell level.

Russell Arnott, University of Bath (UK)

Moss Landing Marine Labs Seminar Series - March 1st, 2018

Hosted by the Invertebrate Zoology and Molecular Ecology

MLML Seminar Room, 4pm

Open to the public

Having studied Oceanography at University of Southampton, Russell worked as a commercial oceanographer before becoming a high school Physics teacher. With a passion for public engagement, Russell left teaching to pursue science outreach as Education Consultant and Presenter for Incredible Oceans. Russell frequently performs at events across Europe including the Cheltenham Science Festival, Elderflower Fields Festival, Wilderness Festival, and Brighton Science Festival.

Russell joined the University of Bath in September 2016 to study phytoplankton morphology and its influence on turbulent interactions. As well as field data, the project involves empirical data gathering via mesocosm experiments leading to the production of 3D-printed scale models of phytoplankton cells.  You can follow him on twitter here.

Mara Orescanin, Naval Postgraduate School

Moss Landing Marine Labs Seminar Series - March 8th, 2018

Hosted by the Physical Oceanography Lab

MLML Seminar Room, 4pm

Open to the public

Dr. Mara M. Orescanin has been an Assistant Professor in the Department of Oceanography at the Naval Postgraduate School (NPS) since 2016.  Here, her research focuses on coastal physical oceanography relating to exchange between land and sea through rivers, inlets, marshes, and estuaries. She is currently supervising four Master’s students whose projects span ephemeral rivers using novel UAV imaging techniques, plume/wave hydrodynamics, as well as numerically modeling storm surge in small tidal inlet systems.  She believes in an hands-on approach to teaching and mentoring geared at stimulating active learning and has mentored students at all levels from middle school through graduate school.  Prof. Orescanin also teaches several classes to active duty naval METOC (meteorology and oceanography) officers at NPS including Nearshore Processes, Ocean Dynamics II: Waves and Instabilities, and Littoral Field Methods. 

Dr. Orescanin received her B.A. with distinction in physics from Carleton College, Northfield, MN, where she discovered her passion for teaching as well as engaging in research outdoors.  After her undergraduate degree, Dr. Orescanin received two M.Sc. degrees in 2009 from the University of Illinois, Urbana, IL, in geology and in theoretical and applied mechanics, where she studied both explosive multiphase flows from volcanoes and the flow of blood cells through small capillaries.  Here, she realized her passion for the beach, and completed her Ph. D. in 2015 through the Massachusetts Institute of Technology/Woods Hole Oceanographic Institution’s Joint Program in Oceanography, in the Department of Applied Ocean Sciences and Engineering.  She also has worked as a coastal engineer/consultant at the Woods Hole Group from 2014-2017 focusing on observations and numerical modeling of tidal marsh restoration projects.

Observations of Intermittent Breaching at the Carmel River, CA