Congrats on Candidacy!

As of Fall 2022 these students in the Vertebrate Ecology Lab have received approval for their Theses Proposals and are now moving into Master's Candidacy

Jack Barkowski

Jack’s thesis work will investigate patterns in humpback whale vocalizations along the U.S. West Coast. Jack will look at the spatiotemporal variation in humpback whale song activity over a 3 year span within the Olympic Coast National Marine Sanctuary, Monterey Bay National Marine Sanctuary, and the Channel Islands National Marine Sanctuary . He will also report the presence and acoustic characteristics of 5 specific non-song calls that have been documented in humpback whale populations around the world, suggesting that these 5 call types play an important role in social interaction. Jack hopes his work will reveal spatiotemporal differences in peak song activity that will allow for more effective management decisions aimed at reducing entanglement risk in fishing gear and ship strikes from large vessels, the two leading causes of anthropogenic-caused mortality for large whales.

 

Kali Prescott

Kali's thesis work will be focusing on exploring how Computational Fluid Dynamics can be used to estimate drag incurred by biologgers and other externally attached devices.  She will be examining Northern Elephant Seal, Mirounga angustirostris, as a model species using 3D scans collected during the seal's haul out periods at Año Nuevo State Reserve. These scans will be used to build 3D models of the seals along with 3D models of the biologgers generated using Computer Assisted Design Software (CAD). Using a fluid dynamics program originally designed by Engineers, Kali will simulate drag and drag coefficient by placing the tagged seals models into a computer generated flow through chamber. These models will be used to identify what factors associated with biologger attachment (size, location, and number of loggers) will most impact the incurred drag. These proxies for drag will then be compared to foraging, dive, and reproductive data collected from animals tagged in real life to determine if there are any measurable impacts.

Eyes in the (Washington and Oregon) Skies

By Sierra Fullmer

Many beach goers love to watch coastal animals resting, playing, and swimming along the shoreline, including my typical study species, the southern sea otter. However, some species are much harder to find and require extensive efforts to see them, even for the experts! During the months of August and September I worked with a small team of scientists from NOAA and the affiliated organizations Upwell Turtles and Moss Landing Marine Laboratory to survey the Oregon and Washington coastline and locate, capture, and gather valuable information on the endangered leatherback sea turtle.

Aerial survey team in front of the Twin Otter observation plane. People from left to right: Sierra Fullmer, Nick Toth (NOAA pilot), Katherine Whitaker, Karin Forney, Scott Benson, Priti Bhatnagar (NOAA pilot), Garrett Lemons. Not pictured: Vicky Vasquez and NOAA pilots Conor Maginn and Kennieth Brewer. Photo credit: Garrett Lemons

As a part of the aerial team, I assist with locating these five- to six-foot, 800- to 1400-pound leatherback turtles, but it’s not as easy as it may seem!

My role as an aerial observer involves scouring the seas for any signs of turtle habitat, food, and other associated species - plus on our very best days the turtles themselves! The Western Pacific leatherback sea turtle population has declined by approximately 80 percent since the 1980’s1,2. Leatherbacks face challenges all throughout their lives. Although they are largely protected at their primary nesting beaches, they still face threats at secondary nesting beaches, where adults are occasionally still harvested, and eggs poached. Upon leaving their nesting grounds, juvenile and adult leatherback turtles face a maze of fisheries as they pass through the Exclusive Economic Zones (EEZs) of many fishing nations and international waters while traversing the entire Pacific Ocean to reach the western coastline of North America. Once in North American coastal waters, adult leatherbacks spend the summer and fall months feeding on blooms of jellyfish that annually occur with upwelling events of cold, nutrient-rich water being drawn to the ocean surface1. How these leatherbacks select and re-locate these patches year after year is still unknown, and part of what we hope to investigate with our surveys. But fear not, we have figured out some clues to help us in our search.

 

On “fly-days” our lead researchers Scott Benson and Dr. Karin Forney have undergone intense weather monitoring and decided we face good wind and cloud conditions that should provide calm, white-cap-free waters. In our ideal weather days, the waters are so calm that we can see the airplane’s reflection on the water from 650 feet in the air! Once we get the go-ahead, we pile into our cars, head to the airport to meet our NOAA pilots, and prepare our recording equipment before strapping in and taking off!

On our first few flights, we hoped to get a coarse understanding of the environment along the Oregon and Washington coastlines and to identify areas where we might have the best luck turtle-spotting. Over the course one week, we spent 28 flight hours flying transect lines that extended from Newport, Oregon to just south of La Push, WA. With these long flight days, we collected data on water conditions, jellyfish blooms, and marine species presence within 25-30 miles of the coast. Our initial transects were spaced every four miles of latitude, which narrowed to a more fine-scaled 1-mile spacing as we focused in on the main target area. Non-turtle species data we collect not only assists with our project but can also be used in other studies such as harbor porpoise population surveys.

But how did we get this information? We stuck our faces (almost) out of the plane of course! But not how you might think...

For these surveys we are flying a specially modified Twin Otter plane owned by NOAA that has a large “bubble window” on either side just behind the pilots and an additional belly window in the back of the plane. These windows combined allow our observers an almost 180-degree view of the water below! While surveying, each observer spends approximately 45 minutes sticking their entire head and shoulders into the windows and calling out every species of animal they see. Then when you finally start to feel a kink in your neck and think you may never make it out of the window, you rotate! My personal favorite spot in the plane is the belly window, where you lay in the back of the plane, stick your head into the small window, and watch the water, algae, and animals as you fly by. If you’re lucky enough to be in the belly on a perfect day, you can even spot your own reflection hundreds of feet below!

Lead scientist Karin Forney looking out through the belly window mid-survey.

An external view of aerial observer, Sierra Fullmer, looking through the belly window. Image was taken from below while the plane was parked on the tarmac.

Although these views sound glamorous, much of our time is spent looking through sun glare, counting tens to hundreds of animals (sometimes in the span of a few minutes), and making sure you don’t lose focus waiting to find the elusive turtle hidden amongst the algae and ocean sunfish (Mola molas).

Over the last several years of leatherback research, a trend has appeared that leatherbacks are often found in association with dense aggregations of large Mola mola, or ‘molas’, as we call them for short. Large molas are typically four to eight feet in diameter or longer and feed on the same food as leatherback sea turtles: blooms of jellyfish species including brown sea nettles (Chrysaora fuscescens) and moon jellies (Aurelia spp). While flying over the water, when we hit an area of ‘Mola mayhem’ it’s a period of excitement, focus, and a little bit of insanity – especially for the data recorder. I had the eye-opening experience of data recording through my first section of ‘Mola mayhem’ during this field season, where every observer was calling out mola sizes and numbers every second and my entire job was to record them on our digital data log as fast (and accurately) as possible. My fingers were flying so fast I even knocked a key off the keyboard! Don’t worry though, I replaced it at the end of the mayhem.

To get an idea of the mayhem picture this, you’re standing in the middle of an auction house where three different auctioneers are calling out their bids at the same time and your job is to write down everything each auctioneer is saying simultaneously and correctly. Mayhem is the only description. However, it’s extremely important data to collect to really narrow down where our turtle habitat may be, as this helps us find the few leatherbacks that are still making it through the maze of fisheries to our coastlines each year. The proof is in the results.

At the end of our third survey day, with only an hour of fuel left, our team was flying through Mola mayhem calling out large molas left, right, and center when the belly observer calmly called out “turtle” and all chatter stopped for what felt like the longest second. In this time, our pilots and data recorder marked the coordinates as fast as possible, and everyone instantly went on high alert. This was our chance. The pilots circled back, once more flying over the area while every observer was trying to look past the glare of the sun sitting low on the horizon. The pilot started a count down, “You should see it in three…two… one…” and to our amazement the turtle popped out of the glare. The entire crew erupted with excitement and started calling out directions, “turtle at your nine-o’clock, just under the wing!” We managed to circle it for approximately 15 minutes, relocating it between shallow dives and getting a good look to confirm there was no tail (which means it was not an adult male). It was a large, round female and our first aerial sighting in the Pacific Northwest since 2011!

It was the perfect ending to what had been my longest day of flying so far, and a sense of hope for the rest of our survey efforts. Now that we know where to find ‘turtle water’, we have our zone of Mola mayhem, and we know there’s still turtles out there, we hope we can find more turtles for Stage 2: boat capture and tagging. Hopefully I’ll have more updates for you all at the end of the field season, until then I’ll be one pair of the eyes in the sky!

Aerial observer, Sierra Fullmer, looking out the bubble window during a survey, watching the glassy ocean surface passing below. Photo credit: Karin Forney

References

  1. Benson SR, Eguchi T, Foley DG, Forney KA, Bailey H, Hitipeuw C, Samber BP, Tapilatu RF, Rei V, Ramohia P, Pita J, Dutton PH. 2011. Large-scale movements and high-use areas of western Pacific leatherback turtles, Dermochelys coriacea. Ecosphere. 2(7):art84. doi:10.1890/ES11-00053.
  2. Benson SR, Forney KA, Moore JE, LaCasella EL, Harvey JT, Carretta J V. A long-term decline in the abundance of endangered leatherback turtles, Dermochelys coriacea, at a foraging ground in the California Current Ecosystem. Glob Ecol Conserv. 2020;24:e01371.
  3. Tapilatu RF, Dutton PH, Tiwari M, Wibbels T, Ferdinandus H V, Iwanggin WG, et al. Long‐term decline of the western Pacific leatherback, Dermochelys coriacea: a globally important sea turtle population. Ecosphere. 2013;4:1–15.

Elephant Seal Field Season Wrap Up!

Greetings from the Vertebrate Ecology Lab

You may not know this, but much of research here in the Vert Lab is on the ever charismatic Northern Elephant Seal! Each year, we get to work with colleagues from institutions such as UC Santa Cruz, UC Davis, Sonoma State, and many more, to investigate the lives of these incredible animals. There are dozens of research topics from biologging studies, foraging ecology, sleep studies, reproductive success, dive behavior, stress responses, and more being investigated by our little research group here at MLML and by our colleagues elsewhere.

Currently we are wrapping up a very successful field season, which typically runs from November to early June. This year we investigated the feasibility of new physiological biologgers including testing non-invasive near-infrared spectroscopy (NIRS) dataloggers to measure arterial blood oxygenation and MOxyLog sensors for measuring muscle oxygen (National Science Foundation Grant #: 1656282). These loggers will aid in future physiological studies that improve our understanding of how these animals perform long deep dives and how they are impacted by anthropogenic stressors

This year, we got to do all of this in addition to our yearly participation in the field efforts out at Año Nuevo State Park including: helping with daily resights, deploying and recovering tags at the colony, and yearly weaner weighing (All work performed under NMFS permit #: 23188).

(Take a look at this video to see more of what goes on up at Año Nuevo State Park, note this video was shot prior to the COVID-19 pandemic)

The seals are finishing up their yearly molt and soon the adult females, many of whom are pregnant, will head out to sea for their long nine month migration out into the North Pacific. We will have a reprieve from field work until they return in December. Happy Trails!

VEL students Shawn Hannah & Lauren Cooley present their thesis’ projects at EB2022!

Lauren Cooley (right) and Shawn Hannah (left) presented their thesis research at the Evolutionary Biology 2022 Conference last month! You can read their published abstracts here:

Hannah et al: Examining the Plasticity of the Dive Response in Relation to Dive Behavior of Northern Elephant Seals. (2022).

Cooley et al: Research Handling Effects on Stress Hormones, Blood Parameters, and Heart Rate in Juvenile Northern Elephant Seals (Mirounga angustirostris). (2022).

And congrats to Lauren for being presented with the Research Recognition Award from the American Physiological Society's Comparative and Evolutionary Physiology Section.

Congrats to VEL Members for being awarded MLML Student Scholarships, COAST grants, and more!

Congratulations to the following VEL Lab Members to being awarded scholarships/grants this Spring!

Loury Family Marine Science Outreach Scholarship - Kali Prescott

MLML Student Body Scholar Award - Daphne Shen

MLML Student Body Wave Award - Sierra Fullmer, Taylor Azizeh

COAST Graduate Student Research Award- Emma Nicholson, Taylor Azizeh

Dr. Earl H. Myers and Ethel M. Myers Oceanographic and Marine Biology Trust Award (In addition - Baldridge Award for the Best Research Proposal) - Daphne Shen

Happy Holidays from the Vertebrate Ecology Lab!


With all vaccinated (and testing negative for Covid the day of), us at in the Vertebrate Ecology Lab here at MLML had our first in-person gathering in 2 years.

We got together for food, Danish present stealing games, rice pudding, and glogg. It was lots of fun unwrapping our stolen two-person "ugly" Christmas sweater, giant coffee mug, and all manner of ocean themed goodies.

We wish you all a safe and happy holiday season!

Funded M.S. Position Available: Physiological Ecology of Emperor Penguins —  apply for first consideration before Dec. 1st 2020

MS in Marine Science: Physiological Ecology of Emperor Penguins

Dr. Birgitte McDonald of the Vertebrate Ecology Lab, Moss Landing Marine Laboratories at San José State University is seeking an MS student interested in physiological ecology of seabirds.

Project Overview

By Gitte McDonald (own work)

The survival and success of marine predators depends on their ability to locate prey in a heterogeneous environment. To do this the predators need to be able to adjust their foraging behavior depending on the conditions they encounter, particularly in a changing environment. As ice-dependent top predators, Emperor Penguins are indicators of both drastic and subtle changes occurring throughout the food web and the state of the sea ice. Like other predators, they are vulnerable to environmental change: these changes permeate through the food web, modifying foraging behavior, and ultimately survival and reproduction. Despite their importance in the Southern Ocean ecosystem, relatively little is known about the mechanisms Emperor Penguins use to find and acquire food. This National Science Foundation funded project combines a suite of technological and analytical tools to gain essential knowledge on Emperor Penguin foraging energetics, ecology, and habitat use during critical periods in their life history. Specifically, we will investigate the foraging energetics, ecology, and habitat use of Emperor Penguins at Cape Crozier, the 2nd most southern colony, during late chick-rearing. Energy management is particularly crucial during late chick-rearing as parents need to feed both themselves and their rapidly growing offspring, while being constrained to regions near the colony. The masters student will complete a thesis that contributes to the projects goal. Two years of NSF-funded tuition and stipend support are available for the selected student.

Qualifications

Required qualifications

  • Either a bachelor’s degree in Biology, Physiology, or Ecology with skills in quantitative analyses, or a bachelor’s degree in Statistics or Mathematics with documented experience in biology.
  • Research experience
  • Excellent spoken and written communication skills
  • The ability to work independently and work well as part of a team

Preferred qualifications

  • Field experience, ideally with seabirds or marine mammals
  • Experience with R or MatLab

Interested candidates should email a cover letter with your research interests and experience, a CV, unofficial transcripts, and GRE scores (if available) to Dr. Gitte McDonald (gmcdonald@mlml.calstate.edu). Qualified candidates will be contacted to discuss the project and program further and encouraged to apply to the MS program (Due Feb 1, 2021). Emails with required attachments received before December 1, 2020 will receive first consideration, but the position will remain open until a student is selected.

EXPEDITION TO CAPE CROZIER UPDATES: October 21-27th

Wheels on Ice!

The Emperor Penguin Team successfully departed Christchurch on Monday October 21st and arrived at Scott Base, Ross Island, Antarctica . Our flight on the C-17 was an easy 5 hours and the views from the fixed window were marvelous. As we approached Antarctica the plane started to get colder forcing all of the passengers to put on our extreme weather gear. Landing on ice was smoother than I had anticipated especially considering the great weight of the plane and contents including a full size helicopter, packed cargo and passengers.  The C-17 landed and the passengers excitedly grabbed their things and started to exit the plane. Since the plane did not have many windows in the seating area our steps through the plane door were our first view of Antarctica.

For those of us who had never been to Antarctica before the views were quite literally breathtaking as the dry cold air filled our lungs. For others who have been here before, I can imagine this never gets old. In the distance we could see Mt. Erebus and Mt Discovery. We had a short walk on the ice to the large transport vehicle called a Kress. We boarded the Kress and after a safety briefing all the passengers buckled in and we were a short 30-minute drive to Scott Base. Once at Scott Base we received a tour of the well-maintained facilities and met with the staff to plan our busy week of preparations including our Antarctic Field Training (AFT) that involved an overnight stay on the ice.

AFT Overnight Oct. 22nd

As part of our field training we learned to use our primus stoves, set up tents, and safety procedures for working in cold and unpredictable environments. Following our training we then prepared our gear for our overnight stay on the ice shelf. We loaded all our gear on sleds and pulled them by hand for a half hour. We learned to drill ice cores and assess the stability of ice which involved first digging a hole in the snow about a meter and a half deep. Once we reached the ice-surface we used a Kovac-drill to burrow through the ice. We determined that the ice was stable enough to set up camp as it fell within the 70cm+ regulated thickness. Following the assessment, we proceeded to set up three Scott Tents and two mountaineering tents rated to withstand the worst weather conditions (Grade 1). Emperor penguin team member Markus created a much-appreciated  wind break and cooking area for the crew. With wind chill the temperature dropped as low as -36 degrees Celsius. We set up our tents, enjoyed a nice dehydrated meal, filled our water bottles with hot water, and headed to our beds. Exhaustion made sleeping very easy after this long day.

Recon Flight Success Oct 23rd

Gitte and Markus flew out to Cape Crozier today via helicopter to plan out our field camp location and locate the penguin colony. Good news the emperor penguin colony was located and estimated numbers are around 1,500 individuals. They were also able to locate a secure spot perfect for our camp. We are scheduled to fly out and set up camp on Monday October 28th.

Expedition Gear Preparation

For the last four days we have been busy gathering, weighing, putting together 5 helicopter loads full of essential gear we require while at remote camping at Cape Crozier for 3-4 weeks. Gear includes food for 5 weeks, 9 tents, generator, cutlery, sleeping gear and everything that we may require for daily use. It has been very busy and exciting packing all of our gear as we carefully plan what we will need for the next four weeks.

We also have been field testing our data-logging tags in the cold conditions and everything is looking good and ready for Monday.

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Behind-The-Science Look At The Technology We Use to Study Emperor Penguins: 10/17/19

Diving Deeper

Emperor penguins are the largest species of marine bird, and perhaps because of their size, they fast longer, dive deeper, and endure harsher conditions than any other avian species. As a top predator in the Antarctic ecosystem, they have a significant top-down effect on prey targeted during long, deep breath-hold dives. It is therefore essential to understand emperor penguin habitat use, diving capabilities, food habits, and behavioral flexibility in order to interpret their role in the food web and their ability to adapt to environmental change. However, studying marine vertebrates has its challenges, as we cannot visually observe their underwater behavior.

During late chick-rearing emperor penguins, a colonial breeding seabird, alternate 5-20+ day foraging trips with short visits to the colony to feed their chicks.  During these foraging trips they may travel over 100 kms from the colony and dive to depths exceeding 500 meters for over 30 minutes(Kooyman et al. 1992; Wienecke et al. 2007;  K. Sato et al. 2011; Goetz et al. 2018)! Incredible!!

Although researchers may not be able follow penguins on their extreme journeys, engineered data-logging tools (tags) allow us to track animals at fine-scale resolutions. This season we are deploying tags on 20 adult emperor penguins as they head to sea to forage. Four tag types of variable configurations will be used to study at-sea behavior. Some of the data these tags collect include dive depth, acceleration, GPS location, and video allowing us to determine where they go, when they are foraging, and what they are eating.  Additionally, the tags collect data telling us about the environment the penguins are using such as temperature and light level. With these data loggers we hope to document many firsts.  This will be the first study to document the foraging behavior of penguins from Cape Crozier, one of the southernmost colonies. Additionally, we are excited to visually document the foraging behavior of emperor penguins for the first time using a miniature video-logger developed by Little Leonardo Corporation in Tokyo. We will learn more about what they are eating and how they are catching their prey.

To further our understanding of the hidden lives of emperor penguins we must go where few have gone before.

Dive On,

Emperor Penguin Field Crew

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