Understanding Early Diagenesis in the Monterey Bay

By Catherine Drake, Invertebrate Zoology Lab

Sedimentation is the process by which particles sink and accumulate on the seafloor. Layers upon layers of these settled materials tell the story of the oceans and climate from which they originated. Alterations to these sediments from compaction, bioturbation, and microbial respiration form sedimentary rocks through an action termed diagenesis.  A better comprehension of diagenesis is needed to translate the sedimentary record into clues that help explain past events. To better understand these processes, students at MLML take the MS 274 “Advanced Topics in Oceanography” course.  This class, taught by Dr. Ivano Aiello and Dr. Kenneth Coale, examines the factors that affect sedimentation and subsequent diagenesis in Monterey Bay.

A major driver of sedimentation is the ocean “biological pump.” This is the fixation of carbon by phytoplankton and the subsequent transport of plankton debris to depth.  Over time, these materials undergo diagenesis as more sediments are deposited and compacted or consumed and disturbed by organisms. The process of diagenesis mimics many of the same processes as we observe in a compost pile, but occurs much slower.

To study which organisms drive the biological pump in Monterey Bay, the MS 274 class constructed sediment traps. To build the array, we first mastered the technique of splicing rope together.  This rope held our sediment traps to a mooring approximately 30 feet above the seafloor to ensure that the traps would be suspended in the water column.   On top of the array, we fastened a surface float to aid in recovery.  The purpose of the array was to catch fresh material that we could compare to materials in cores from the seafloor at the same location.

Learning to splice rope to use for our sediment trap array. Photo by: Diane Wyse
Emily Donham and Catherine Drake learning to splice rope to use for our sediment trap array. Photo by: Diane Wyse
Dr. Kenneth Coale drew out a schematic for our sediment array. Photo by: Diane Wyse
Dr. Kenneth Coale drew a schematic for our sediment array. Photo by: Diane Wyse

On September 24, 2012, we boarded the R/V John H. Martin and set a course for a location in Monterey Bay that was approximately 60 feet deep and deployed our sediment trap array.  Then, two weeks later on October 8, 2012, we again set off aboard the R/V John H. Martin and collected the samples to begin our investigation into the process of sedimentation in the Monterey Bay.

The MS 274 class waits aboard the R/V John H. Martin to reach the sediment trap deployment site. Photo by: Catherine Drake
The MS 274 class waits aboard the R/V John H. Martin to reach the sediment trap deployment site. Photo by: Catherine Drake

This involved many hours of sitting at multiple microscopes and quantifying the type of particles we saw; now, these microscopes that we used aren’t your average dissecting scope.  Instead, to get a better depiction of the composition of each sample, we used two specialized types: petrographic and scanning electron microscopes.  These specialized scopes gave us better resolution when trying to identify and quantify the lithogenic (of rock origin) and biogenic (of biological origin) particles in our samples.

This image is produced from a petrographic microscope, which uses polarized light to highlight the minerals in a sample. Photo by Catherine Drake.
This image is produced from a petrographic microscope, which uses polarized light to highlight the minerals in a sample. Photo by Catherine Drake.
Scanning Electron Microscopy (SEM) shows a pennate diatom from a sample within the surface-sediment interval, or "fluffy" layer. Photo by: Catherine Drake.
Scanning Electron Microscopy (SEM) shows a pennate diatom from a sample within the surface-sediment interval, or "fluffy" layer. Photo by: Catherine Drake.

Now remember that processes such as compaction, bioturbation, and respiration form sedimentary rocks through diagenesis. Due to a strong current system in Monterey Bay, we hypothesized that biogenic substances would be transported offshore and thus would not be present in a shallow, high energy, depositional environment, even though they are present in the water column.  In contrast, it was hypothesized that lithogenic particles would be dense enough to deposit in a turbulent coastal environment.

We actually found that there was a higher percentage of lithogenics in both the sediment traps and the cores.  For the two weeks that the sediment traps were deployed, dredging was occurring in the Moss Landing harbor, making the water very turbid.  So, we suggest that this could be a possible explanation for the high percentage of minerals in the sediment trap sample.  Overall, we learned that Monterey Bay, with its submarine canyon and turbulent waters, is a very unique system when observing the processes of sedimentation and early diagenesis!

Chronicles of a Curious Beachcomber

by Angela Szesciorka, Vertebrate Ecology Lab

A few Sundays ago — Super Bowl Sunday, in fact — I took a three-hour walk along the beach at Fort Ord in Monterey, CA with Don Glasco, a systems engineer and former cartographer.

This wasn’t a leisurely pursuit, but my volunteer service to the Sanctuary Integrated Monitoring Network’s (SIMoN) Coastal Ocean Mammal and Bird Education and Research Surveys, also known as Beach COMBERS.

I meet Don at Fort Ord Dunes State Park in Marina around 9 a.m. After downing the last of my coffee, we head out into the foggy morning.

Don Glasco referring to the almighty bird book to identify an unknown species by its toes. Photo by Angela Szesciorka.
Don Glasco referring to the almighty bird book to identify an unknown species by its toes.

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And Now for Something Completely Different

by Angela Szesciorka, Vertebrate Ecology Lab

Most of my posts tend to reflect my love of marine mammals, specifically the large, “charismatic whales” as they are oft referred to.

But I wanted to tell you about one of my day jobs. [As if grad students have all this time in-between taking classes and working on their thesis. But I digress … ]

I work for a marine engineering company in Santa Cruz, doing coastal engineering. Or, what we tell the general public: we play with mud.

Coastal engineering is a sector within civil engineering. This means companies hire us to help them with harbor design and construction; beach nourishment and erosion studies; wave modeling and forecasting, sediment transport modeling; and dredging and pile driving monitoring; among many others.

Dredgers in the Moss Landing harbor. Photo by Angela Szesciorka.
Monitoring the dredgers in the Moss Landing harbor.

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What’s that on the rock?

By Michelle Marraffini, Invertebrate Zoology Lab

Can you see the octopus?
What do you see on the rock?

What's that on the rock?

The invertebrate zoology class took a field trip to Asilomar State Beach last week to look for cool creatures.  Professor Jon Geller encouraged us to turn over rocks looking for flatworms, the topic of this week's lecture.  As I overturned one rock I noticed something quickly hunker down.  It was this tiny octopus that tried to camouflage itself with the rock.   An octopus's boneless body is well suited for changing its shape and its ability to mimic other animals, algae, and rocks or sand can be quite impressive.  Check out this video of an octopus camouflaging itself ('Where's the Octopus?').  These extraordinary animals are different from other camouflaging animals because they not only change their color and shadow but they also change the texture of their skin to match their background and they do all of this by sight!

Their very kein eyes detect the object they wish to look like and control over 30 million chromatograms (color producing cells) and papilla (cause the three dimensional shape of the skin).  Octopus's do this while color blind which mystifies scientists.

Look under rocks
Small octopus found at Asilomar State Beach hiding under a rock at low tide.

This octopus I found is likely a Pacific red octopus (Octopus reubescens), though it swam away before I could get a good look (no animals were harmed in the making of this blog post).  This is so far the coolest creature I have seen in the intertidal.  Get outside and see what you can find!

Taking off safe and sound
My little buddy swimming away.

Biological Oceanography Class Field Trip to the California Maritime Academy

by Diane Wyse, Physical Oceanography Lab

Last week the biological oceanography class took a field trip to the California Maritime Academy in Vallejo.  The purpose of the trip was to learn about the MLML Biological Oceanography Lab’s work with ballast water treatment aboard the Training Ship Golden Bear.

VallejoBridge
View of the Carquinez Strait Bridge from the TS Golden Bear. Photo: D. Wyse

We started the day with background about the importance of ballast water treatment for aquatic invasive species management, led by Biological Oceanography Lab students Brian Maurer, Heather Fulton-Bennet, and Julie Kuo.

Biological oceanography student Brian Maurer concentrates a water sample to test for zooplankton viability.
Biological oceanography student Brian Maurer concentrates a water sample to test for zooplankton viability. Photo: D. Wyse

 After that we took a tour of the ship’s engine room, bridge, and saw some of the living quarters.  The ship can house up to 350 people and each year takes a 2-month cruise in different parts of the world to train Cal Maritime students about merchant marine operations and engineering.

Members of the biological oceanography class take a tour of the TS Golden Bear. Photo: D. Wyse
Members of the biological oceanography class take a tour of the TS Golden Bear. Photo: D. Wyse

In the afternoon we took a tour of the marine biology lab, where Biological Oceanography lab students, under the direction of Dr Nick Welshmeyer, analyze the effectiveness of different ballast water treatment methods.

Biological oceanography student Heather Fulton-Bennet counts live zooplankton under a microscope on the TS Golden Bear
Biological oceanography student Heather Fulton-Bennet counts live zooplankton under a microscope on the TS Golden Bear

Whales, Pinnipeds, and Sharks, Oh my!

By Kristin Walovich

On the weekend of the 26th and 27th of January 2013 WhaleFest was held at Fisherman's Wharf in Monterey. Organizations ranged from local non-profit marine research and public outreach organizations and program here in the Monterey county, as well as fun activities such as painting a squid!

Camp Sea Organization in WhaleFest
Camp Sea Lab in WhaleFest

Our own very Pacific Shark Research Center participated in this event to share their knowledge of sharks to the public. It was a very windy, cloudy, and cold on Saturday as we set up the station. The strong wind made it a challenge to keep fliers and posters on the table. Braving the weather, our efforts were recognized as visitors intrigued by the mako shark Isurus oxyrinchus head and of a shark fin we had on display, began to ask questions. We were able to teach visitors more about sharks and also talk about the research that's going around in Moss Landing Marine Laboratories! Many of them are very interested in attending the Open House event that will be held at MLML April 20th and 21st.

Visitors intrigued by the shark head.
Visitors intrigued by the shark head.

 

There were many attempts to inflate a humpback whale in the Festival on Saturday, but because of the strong wind, the whale was never completed.

Inflating the humpback whale
Inflating the humpback whale

But luckily, the weather cleared up and the sun came out and made WhaleFest far more enjoyable!

Kristin interpreting for the visitors
Kristin interpreting for the visitors

Whalefest 2013 this weekend at the Monterey Old Fisherman’s Wharf

By Kristin Walovichaa whalefest-logo (5) color

Celebrate the return of the Grey Whales to the Monterey Bay at the Whalefest Monterey 2013 event this weekend Saturday, January 26th and Sunday, January 27th !

This event aims to bring public awareness to the marine non-profits that influence the Monterey Bay Marine Sanctuary by offering a variety of fun activities, events, and exhibits from over thirty organizations.

Our very own Pacific Shark Research Center will have a booth set up this weekend!  Find us at the Causeway at Old Fisherman’s Wharf from 9am to 5pm.

The grey whale makes one of the longest annual migrations of any mammal, traveling nearly 5,000 miles from its northern feeding grounds to warmer winter calving grounds. Photo: Julian Pye
The grey whale makes one of the longest annual migrations of any mammal, traveling nearly 5,000 miles from its northern feeding grounds to warmer winter calving grounds. Photo: Julian Pye

Spring Tales and Tides

By Diane Wyse

Moss Landing Marine Labs resumes classes today, and with the new semester comes renewed offering of exciting courses.  This spring, students at MLML have a number of options to satiate their appetites for statistics and data analysis, courses on scientific writing, methods, organisms both macro and micro, and field trips from the surface waters of Monterey Bay to the Elkhorn Slough to explorations of the seafloor and beyond.

Keep an eye out for stories from these classes and more as we hypothesize, test, and study our way through the spring semester:

Haiku of the Week – Scientific Writing

Humpback whales. NMFS Permit #: 15271
Humpback whales. NMFS Permit #: 15271

Subtidal Ecology - one of our triennial field course offerings is back!

Recent Phycology Lab graduate and Friends of MLML Director Brynn Hooton-Kaufman manipulating Undaria for an NSF grant experiment. Photo: S. Jeffries
Recent Phycology Lab graduate and Friends of MLML Director Brynn Hooton-Kaufman manipulates Undaria for an NSF grant experiment. Photo: S. Jeffries

Algae pressing and herbaria  - Biology of Seaweeds

Recent Phycology Lab graduate Sara Tappan-Hutto shows visitors an algae pressing. Photo: E. Loury
Recent Phycology Lab graduate Sara Tappan-Hutto shows visitors an algae press. Photo: E. Loury

Nutrient analyses and profiles of Monterey Bay, nearshore to offshore – Chemical Oceanography

CTD aboard the R/V Pt. Sur. Photo: A. Woods

Sampling, shipboard techniques, and plankton identification - Biological Oceanography

Julie Kuo, a graduate student in the Biological Oceanography lab at MLML, counts the number of zooplankton in a sample of pre-treated ballast water.
Julie Kuo, a graduate student in the Biological Oceanography lab at MLML, counts the number of zooplankton in a sample of pre-treated ballast water. Photo: C. Drake

…and much more!

A Tearful Farewell to Melanie Mayer-Gideon: True MLML Champion, Friend, and Alumna

Melanie Mayer-Gideon

By Kristin Walovich

Last week the MLML community lost Melanie Mayer-Gideon, a tremendous supporter, friend and alumna.

Melanie was a native of north Monterey County, attending Moss Landing Marine Laboratories where she studied flowering plant recruitment into the newly restored Elkhorn Slough salt marsh. Two years after the completion her thesis, Melanie was instrumental in the reconstruction of the labs after they were completely destroyed by the 1989 Loma Prieta Earthquake. She founded and directed Coastal Conservation and Research, a non-profit that supports watershed restoration, developed the SCINI remote underwater vehicle for under ice exploration, and funds students at MLML. She gave five tuition scholarships to graduate students at MLML just this year.

Melanie’s contributions to MLML and the Moss Landing community are innumerable and priceless. She will be greatly missed.

  • "This is very sad news. Melanie was a great supporter of the Labs and dedicated to the Moss Landing community. She was way too young to leave this earth. She will be missed very much. - H. Gary Greene, Moss Landing Marine Labs"
  •  "It is very sad to hear, Melanie has been a foundation of Moss Landing for a long time. Everyone has great memories of Melanie, one of my most vivid ones is when she beat the bushes to get as many MLML supporters as possible to attend en masse a meeting at the County offices in Salinas to support the rebuilding of the lab. - Rick Starr, Moss Landing Marine Labs"
  • "I can only, with great sadness, echo what others have said about Melanie. I have fine memories of working with her on her innovative research in the Slough. Her efforts to rebuild MLML were and continued to be exceptional, as was her service on the Water Board. She will be missed. My heart goes out to her family. -Mike Foster, Moss Landing Marine Labs"

 

 

 

Check out the R/V Pt. Sur Blog!

By Kristin Walovich

The research vessel Pt. Sur has nearly completed its 8,000 mile journey to Antarctica! While crossing the Drake Passage, the crew was able to capture some great photos of the wildlife they observed.  Check out the Pt. Sur Blog to see these pictures and learn about their adventures along the way to the Palmer Research Station where MLML scientists will be supporting various research groups for two months during Antarctica’s summer months.

Hourglass Dolphin sited by the Pt. Sur during their crossing across the Drake Passage.
Hourglass Dolphin sighted by the Pt. Sur during their voyage across the Drake Passage.  Photo: Scott Hansen
R/V Pt. Sur
R/V Pt. Sur

Did you know?

  • The Pt. Sur crossed the equator for the first time in history on December 18, 2012.
  • The Palmer Research Station is an 180,000 square kilometer study area located to the west of the Antarctic Peninsula. The researchers study the polar marine biome, focusing on the Antarctic pelagic marine ecosystem, including sea ice habitats, regional oceanography and terrestrial nesting sites of seabird predators.
    Adelie penguins at the Palmer Research Station.
    Adelie penguins at the Palmer Research Station.
  •  The Antarctic continent is home to the Adélie penguin, a true polar species that is dependent on the availability of sea ice which acts as a critical platform from which they forage for food. Palmer scientists have documented an 85 percent reduction in Adélie penguin populations along the western Antarctic Peninsula since 1974. These records provide some of the earliest evidence that regional climate warming is negatively impacting the marine ecosystem. Without sea ice, the Adélie penguin access to prey decreases and winter survival becomes more challenging.