A Day on the Bay, Biological Oceanography Style

By Heather Fulton-Bennett, Biological Oceanography Lab

The term cruise generally brings to mind tropical weather and luxurious surroundings, but scientific research cruises are much more about long hours of work and only a few brief moments to enjoy the view. As a new student in the Biological Oceanography Laboratory, I was simply excited to get out on the water.

View of San Francisco Bay
Our view of the San Francisco Bay and Golden Gate Bridge as we approached our anchorage for the afternoon

The Biological Oceanography Lab is part of a testing program for ballast water sterilization systems and utilizes the training vessel TS Golden Bear as a semi-mobile research station. With increasing concerns about the spread of invasive species through boating traffic, researchers are trying to minimize the potential for the viable organism to be transported in the ballast water of ships. State regulations focus on minimizing the number of live organisms present following treatment, and our lab is responsible for determining if treatment systems are effective by providing organism counts. Live organism counts are done by microscope on both the untreated and treated ballast water to compare the number of live organisms before and after the treatment. Current regulations require very low numbers of live organisms to be present in the water, so it is crucial to make sure the systems are effective.

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Dem bones, dem dry bones

by Jackie Schwartzstein, Vertebrate Ecology Lab

Most of us remember the song from childhood:

'Toe bone connected to the foot bone, Foot bone connected to the leg bone, Leg bone connected to the knee bone…'

But here at MLML the students in the Marine Birds and Mammals class (MS 112) are quickly finding that what we learned as kids just doesn’t seem to apply anymore! The skeletons of birds, marine mammals, and turtles are MUCH more complicated than the sweet little bones ditty implies. Have the animals changed since I was in fourth grade?! What exactly IS the ‘foot bone’, anyway?!

Rear limbs of the California Sea Lion.
Photo by Jackie Schwartzstein
Can you find the foot bone?

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Pinnacles National Monument

By Gabriela Navas, Invertebrate Zoology Lab

Who would have thought an extinct volcano can be so very multifaceted and interesting? Not me.

Our Geological Oceanography Class at MLML went to the Pinnacles National Monument the other day, driving up this windy road off of Soledad, California, we see this:

Our professor Ivano Aiello asks the question I very much dread, especially when I have absolutely NO CLUE what the answer could be:

” How do you think these peaks formed that you see in the distance?”

Well, let’s get a bit closer… shall we?

What you see here is actually part of the tube that used to lead into the Magma chamber. The volcano is extinct…no more Magma here, but how did it form?

The usual suspects – a fault line, some major earthquake action, you know the Spiel, Bam volcano. Now, the amazing part is that half of the volcano is actually in Southern California as part of the Neenach Volcanics complex, the other up here in Central California. Due to the position of Pinnacles on a fault line it has been transported all the way up north over the period of 30 million years.

Pinnacles features great hiking opportunities, and if you bring a Geologist friend, an amazingly educational hike at that.

Here you see the original side of the volcano. Smoother than the first formations I showed you:

Here’s Ivano explaining one rock formation type at Pinnacles: The Volcanic Breccia, composed of lava flow cementing multiple types of intrusive rocks that originated from the volcano when it was still active.

Make sure to bring plenty of water on your hike. The heat can be quite overwhelming. We found huge relief from the heat in caves that were definitely not caves as you may have experienced before. These caves were formed by piled-up boulders that went through some major events from earthquakes to subsequent lava flowing over them, cooling, and some more earthquakes, and an occasional landslide as well, oh sure, floods, too.

Bring your flashlight!

This was a treat!

Sponge Behavior & the Emergence of Neural Systems

By Amanda Kahn

In a previous post, entitled "Do sponges have the nerve to eat?", Mr. Singer Singh asked the following question:

"It is found that sponges tend to show different behaviors when exposed to certain stimuli such as touch, air and poison it result in closure of osculum and pores. but then how those response is possible with out any brain or nerves?"

I didn't have all of the background to answer his question, so I forwarded it to Nathan Farrar, a graduate student at the University of Alberta who studies just such behaviors in sponges.  Check out his post below:

Sponge Behavior and the Emergence of Neural Systems

by Nathan Farrar, University of Alberta

This is a very interesting question, in fact, likely one of the more interesting in sponge physiology. It is of course quite true that despite histological searches for nerve or neural-like tissue in sponges, the absence of such tissue is bona fide.  It is also true that sponges exhibit coordinated behaviors in response to diverse stimuli.  For example, Ephydatia muelleri and Spongilla lacustrus, both demosponges, generate an “inflation-contraction”-type behavior.  While a video is worth a thousand words, imagine looking down on a sponge in such a way that the canal system is visible.  During the inflation period, the canals throughout the animal ‘inflate’ allowing the canal system to be engorged with water.  During the contraction phrase, as the name suggests, the canal system is contracted exerting force on the water in the channels thereby forcing it out of the canal system through the osculum (i.e., the vent from which filtered water passes from the animal).  This coordinated behavior serves to flush the canal system of any accumulating debris or toxins, but as the questioner notes can also be triggered by mechanical force.  (See a video of the inflation-contraction response here, http://jeb.biologists.org/content/210/21/3736/suppl/DC1)

So, in short, the facts of the question are entirely correct, but how is this response is generated,  anticlimactic as it may be, is unknown.  A few ways through which behaviors can be coordinated in an organism are via electrical signaling, chemical signaling and mechanical coupling.  I’ll comment here on the first two:  There is one known example of electrical signaling in the form of an action potential in the syncytial glass sponge (Class Hexactinellida), however, the response involved is the arresting of the feeding current, rather than a whole body response as is the case with the “inflation-contraction” response described above.  With respect to chemical signaling, the amino acid L-glutamate has been shown to trigger the “inflation-contraction” response in Ephydatia muelleri in a dose-dependent manner.  Interestingly, in Ephydatia, GABA acts antagonistically with glutamate to suppress the response.  Now, this is curious because glutamate and GABA are major excitatory and inhibitory neurotransmitters, respectively, in animal nervous systems.  Other molecules classically thought of in terms of neurotransmission have also been described in sponges including, serotonin, acetylcholine, epinephrine, norepinephrine, and nitric oxide.  Furthermore, a set of proteins collectively known as post-synaptic density proteins, named for their clustering in neurons, have also been shown to be present in sponges.  What role(s), if any, these other molecules play in coordinating sponge behaviors is unknown.  Furthermore, how glutamate triggers and “inflation-contraction” response, or how GABA inhibits it is unknown.  One hypothesis is that a calcium wave is initiated by glutamate which spreads across the sponge body serving as a coordinating signal for the behavior.

If we consider these facts for a moment we realize there are some interesting evolutionary implications.  Here are a group of animals with no nerves or muscle, yet able to sense their environment and initiate coordinated body responses.  Yet, they also possess a set of “neural” proteins.  While these observations are compatible with more than one hypothesis, one certainly worth examining is that sponges resemble animals situated at the edge of acquiring what we would recognize as a primitive nervous system.

Further reading:

On coordinated behavior in sponges, see Leys, S.P., Meech, R.W. (2006). Physiology of Coordination in Sponges.  Can J Zool. 84: 288-306.

On sponges and the emergence of neural systems, see Renard, E., Vacelet, J., Gazave, E., Lapebie, P., Borchiellini, C., Ereskovsky, A.V. (2009).  Origin of the neuro-sensory system: new and expected insights from sponges. Int Zool. 4: 294-308.

And, Nickel, M.  (2010).  Evolutionary emergence of synaptic nervous systems: what can we learn from the non-synaptic, nerveless Porifera?  Invert Biol. 129: 1-16.

Diving Adventures in Big Creek

By Catherine Drake, Invertebrate Zoology Lab

For many graduate students at MLML, diving is an essential component to their thesis work, whether it involves collecting samples, obtaining data, or making observations about subtidal ecosystems.  Students must be research dive certified in order to perform these science-related activities.  Here at the lab, we have an excellent research diving program run by our research faculty member and Diving Safety Officer (DSO) Diana Steller. Through this program, students have the option of taking the course either during the fall semester or during a two-week intensive course in the summer.

DSO Diana Steller gives the ok after a tough beach entry at Big Creek. Photo by Maria Kyong.

Having gotten my open water certification earlier this spring, I was excited to take the summer research diving class.  For the first week, we practiced a series of underwater skills and swim tests to ensure that we felt comfortable in the water.  There are certain basic scientific skills that must be practiced and perfected to become certified in research diving. These skills include laying out a transect tape and taking observations along the tape.  To master this, we all studied the local fish, invertebrates, and seaweeds to take surveys within the kelp bed for an organization called Reef Check.

I give the ok signal as I practice a Reef Check survey at Breakwater in Cannery Row. Photo by Scott Gabara.

The following week, we caravanned south to Big Creek State Marine Reserve; while there, we camped in the redwoods and dove consecutively for four days.  We would wake up each morning bright and early, eat breakfast to fuel us for the first dive of the day, and then head to the beach.  Diana and Assistant DSO Scott Gabara would brief us on the dives, we’d suit up and enter the water ready to take data.  After our first dive, we’d sit on the beach with our lunches and warm up in the sun before heading out for our second dive.  Once we completed our second dive, we would wade into the large creek (hence the campsite's namesake), wash off our gear and relax.

Diana Steller gives a brief on the dive site. Information in this meeting includes beach entry strategies, transect locations, and allowed depths and dive times. Photo by Maria Kyong.

The kelp canopy and sub-canopy are magnificent habitats at Big Creek.  As I swam out to the location of each transect, I’d get entangled in giant kelp (Macrocystis pyrifera) and feather boa kelp (Egregia menziesii), and would use bull kelp (Nereocystis luetkeana) as an anchor when being pushed around by the swell.  Once we descended, the seafloor was inundated with Pterogophora californica and Laminaria setchelii, so much so that I could not see the bedrock below.  To obtain data for Reef Check, we placed the transect under the sub-canopy and crawled our way through the kelp to count stipes, look for inverts, and point our flashlights at unsuspecting rockfish.

Light can barely penetrate the dense canopy of Macrocystis pyrifera and Nereocystis luetkeana. Photo by Marina Kyong.

I noticed that during any dive, something can and will go wrong, especially when you have transect tapes, slates, compasses, dive computers connected to you as you maneuver underwater.  The most important lesson I learned from Diana on this trip was that it’s how you react to these situations that determines your competence and confidence as a research diver.  If you stay calm and remember to always breathe while your mask fills with water, you get caught in kelp, your datasheet falls off your slate, and the surge inverts you, then you are definitely ready for research diving!

Dive buddies pair up for one last picture after our last, and deepest, dive of the week. Photo by Maria Kyong.
Our awesome summer research diving class! Photo by Maria Kyong.

New Semester, New Students, New Stories

By Diane Wyse, Physical Oceanography Lab

With classes underway, the lab is abuzz with new activities and learning.  This fall, the MLML community welcomes 22 new students to ten of our labs.  Ever find yourself wondering how graduate students at Moss Landing got their start in marine science?  Our new student backgrounds range from gray whale surveys off the Washington coast, to photographing white sharks in South Africa, to shipboard oceanography in Canada, and much more!

Jackie surveying whales off the Washington coast
Kristin freediving in South Africa
Heather performing field research in Canada

Stay tuned for their stories and more from your MLML blog team.

Adventures in Madagascar or On The Importance of Doing a Pilot Study!

by Angela Szesciorka, Vertebrate Ecology Lab

This summer I hopped on a plane, flying 29 hours one way (via Paris — ooh la la) over a period of three days to spend nearly a month on the island of Madagascar working on my pilot study.

Madagascar, a former French colony until 1960, is the fourth largest island in the world. Don’t let it fool you. It looks so tiny next to Africa, but it has 44 percent more area than California, and boasts more than 4,800 km of coastline.

Rocky coastline in Madagascar. Photo by Angela Szesciorka.

Most of the country's export revenue comes from textiles, fish/shellfish, vanilla, and cloves. Newer sources of income include tourism, agriculture, and extracted materials (titanium ore, chromite, coal, iron, cobalt, copper and nickel). Madagascar provides half of the world's supply of sapphires! But with a GDP of around $20 billion, The Economist rated Madagascar as the worst economy in 2011. Most of Madagascar's inhabitants are subsistence livers, meaning they live off of what they can grow or catch.

Local fisherman spear hunting for crabs. Photo by Angela Szesciorka.

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Volunteer Angling with CCFRP

By Jeff Christensen, CSU Stanislaus

In 2011, I had the opportunity to participate in a California Collaborative Fisheries Research Program (CCFRP) fishing trip.  When I received a message from Andrea Launer, CCFRP Volunteer Coordinator, this spring about the summer data collection schedule, I knew I wanted to go out again and be part of this amazing project.

With one of my classes starting on the first day of sampling, I wasn’t able to make the Monday, August 6th date but I was aboard F/V Caroline at Monterey’s Fisherman’s Wharf before sunrise on Tuesday with hot coffee in hand ready to do some angling.  After a safety briefing by Captain Shorty we headed out along the Monterey coastline as Cannery row began to stir in the light of the pre-dawn sky.  The sea was a bit rough and the wind waves made the trip out to the Point Lobos State Reserve a small adventure in and of itself.

Cheryl Barnes, CCFRP Field Coordinator and MLML graduate student, gave the anglers an amusing briefing about the specifics of the collection protocols of the catch and release program.   In order for this work to be helpful in determining if the Marine Protected Areas (MPA) are effective in propagating the species within these areas since their inception in 2007, a variety of anglers were assigned different lures and/ or bait similar to fishing techniques used on guided recreational fishing trips from the area.

By the time Captain Shorty announced over the loud speaker to drop our lines in the water of the first research cell of the day, the rolling waves were already taking its toll on our balance and stomachs. The port side “fish feeding station” was busy early on but as the fog receded, we all got our sea legs and the fishing improved.   The boat as a whole ended up catching and releasing a total of 176 fish from 14 different species, including a 84cm lingcod (Ophiodon elongates) caught by Chris L., fishing next to me.  We must have been in some big fish because not too long after Chris’s lingcod, I hooked another giant fish, I estimated at over 100 cm (due to how hard it was to pull up) but after a perilous fight, the “Big One” got away as it neared the surface.

MLML grad student Katherine Schmidt measures a Lingcod.  Photo courtesy of Starr Lab

While the anglers were pulling up their catch, the scientific staff was busy collecting the fish, measuring them, tagging some, and making sure they were returned to the bottom as soon as possible.  I was thoroughly impressed how each staff member tried to make sure every fish was returned to their home with human stories to tell of their own.  One sea lion, however, was happy to accept a free lingcod h’ordurve as it took a large bite out of an angler’s catch as it was reeled up.  That lingcod, too, was returned to the ocean making a meal for the fish, crab, and sea stars that would finish the work of the sea lion.  The seas were rough as we headed back in and even tossed a few of us out of our seats to the deck (Ouch!).

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Buoy Riding in the Name of Science

By Diane Wyse, Physical Oceanography Lab

Among the coolest aspects of interning at the Monterey Bay Aquarium Research Institute (MBARI) are all of the opportunities for new and exciting experiences in marine science and engineering. On a beautiful Moss Landing summer day, fellow intern Samantha Peterson and I enjoyed one of those opportunities on a day cruise aboard MBARI’s R/V Zephyr.  We steamed out of Moss Landing Harbor early in the morning, and after two hours of getting our sea legs and munching on snacks (to avoid sea sickness, for sure), we arrived at our first of two stops for the day. The cruise plan included a visit to the M2 mooring, a buoy deployed and maintained by MBARI scientists and engineers in partnership with the National Data Buoy Center (ID 46044), to download acoustic Doppler current profiler (ADCP) data and perform routine maintenance.

R/V Zephry from the M2 moored buoy. Photo: D. Wyse

The whole process of visiting and maintaining a mooring was really exciting to experience, especially as a student of physical oceanography.  I got a kick out of the adventure inherent in maintaining oceanographic and meteorological instruments bobbing at the surface, moored 1000+ meters below on the seafloor.  As I stood at the back of the Zephyr taking in the experience- the albatrosses gracefully landing to investigate our activities, the sea lion curiously poking it’s head up around the buoy, the scientists and technicians climbing onto the buoy from the side of the ship- I wondered what sort of training or security clearance one has the endure to work on the buoy.  After pondering this aloud to my fellow intern, I inquired with the ship operator.  His job was to carefully back the boat up to the buoy to transfer people and equipment, then to maintain a safe distance from the buoy while the technicians were working on it.  As it turns out, it was surprisingly simple; I had to confirm with just about everyone on that day cruise that I am not sensitive to seasickness before getting the go-ahead to disembark the trusty Zephry and climb (well, pounce, really) aboard M2.  I could see immediately what everyone was driving at once I was aboard the mooring.  Because the platform is only about 10 ft in diameter, it is much easier to get tossed about with the swell.  You feel much more in touch with the ocean on a smaller vessel.  While ocean observers Mike Kelley and Jared Figurski downloaded the ADCP data, I climbed to the upper level to investigate the meteorological instruments.  With my finely tuned CSI skills, I observed the evidence of seabird visitors on the solar panels and offered to clean off the droppings, you know, in the name of science.  Surprisingly, they were more than happy to oblige that request, and I grabbed a cloth with seawater and scrubbed those panels squeaky clean.

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Fish Feeding Frenzy

By Scott Gabara

In the southern California bight, the Channel Islands archipelago sits in warm subtropical waters brought north along the coast from Mexico to the islands.  Toward the east, Santa Catalina Island supports many different fishes living in these warm waters.  On a recent thesis sampling trip, frenzied fish behavior was observed.  Similar to people gathering at a popular eatery, small orange cigar shaped fish called Senorita, and speckled kelp bass, schooled near disturbances created by divers.  You may see the small grayish crab in the photo just underneath the fish's mouth (see below).  These fish would say that algae mats provide a home for many tasty invertebrates!