Holly had an awesome experience as a visiting researcher at Cawthron (New Zealand) in 2020! Although she has previously collaborated with some of their team, those relationships were expanded upon and new ones were formed during this visit. She worked closely with the Biosecurity Team to run two experiments testing different filter types and filtration times for efficient eDNA and eRNA capture, using the dinoflagellate Alexandrium as a model species. An eDNA/eRNA review paper with a biosecurity angle is in the works. With the Safe New Zealand Seafood Programme she worked to expand geographic specificity testing for qPCR assays targeting four species within the toxin-producing genus Pseudo-nitzschia. A continuing collaboration with the team aims to characterize species diversity and toxin production of a subset of Pseudo-nitzschia species around New Zealand. She returns with an expanded knowledge base and heaps of ideas for future collaborations!
Uncategorized
Webinar: Beyond the Lab, How to Generate High Quality qPCR Data Anywhere
Recently, Holly (in conjunction with Ubiquitome) gave a webinar about using the handheld qPCR machine in the field. The webinar was designed to be interactive such that attendees from around the world could ask questions and share in the challenges of field-based testing.
You can catch the webinar here!
https://zoom.us/recording/play/2D_M2xlXlu6vK9GFyTC9n15mGoeG42OCyxZU6R4qpW1W4HUuliDMTMtnXEqykUf2?continueMode=true
2019 MLML Open House!
It has been awhile since EBL has formally participated in Open House! This year, we had a fun time debuting our handheld qPCR devices to members of the community. Visitors first entered the ‘Twilight Zone’ of Dr. Colleen Durkin’s lab and walked through marine snow and representative organisms found in the deeper ocean. They were then introduced to a surface water net tow, collected fresh that morning from the Monterey Wharf, teeming with diatoms and dinoflagellates (thanks for cooperating, Mother Nature!). EBL talked about how it’s complicated to pick out specific harmful algal species of interest from that gimmish, and how we are using genetics to do that! Folks were amazed to see we can do this from an iPhone, on a battery powered instrument, in the field!
We have a new lab member!
Yes, we count cool toys as lab members sometimes! The Liberty16 is a handheld qPCR device and we can’t wait to get out in the field with it soon to detect Harmful Algal Bloom (HAB) species in real-time to support various stakeholders around the Monterey Bay area! Stay tuned for more updates as we roll out this exciting technology out of Ubiquitome in New Zealand.
Monterey Wharf 03/07/2018
Happening at the Monterey Wharf
Flagellates flock to Pseudo-nitzschia in water samples collected off the Monterey Wharf, 08/09/2017.