Publications
Peer-reviewed journal articles
Free versions available for download at SJSU Scholarworks:
works.bepress.com/thomas-connolly
Connolly, T. P. and S. J. Lentz. 2021. Observations of nonlinear momentum fluxes over the inner continental shelf. Journal of Marine Research, 79(1), 27-66. https://doi.org/10.1357/002224021834614425
Smith, K. L., A. D. Sherman, P. R. McGill, R. G. Henthorn, J. Ferreira, T. P. Connolly, and C. L. Huffard. 2021. Abyssal Benthic Rover, an autonomous vehicle for long-term monitoring of deep-ocean processes. Science Robotics 6(60), eabl4925. https://doi.org/10.1126/scirobotics.abl4925
Connolly, T. P., P. R. McGill, R. G. Henthorn, D. A. Burrier*, C. Michaud*. 2020. Near-bottom currents at Station M in the abyssal Northeast Pacific. Deep Sea Research II: Topical Studies in Oceanography, 173, 104743. https://doi.org/10.1016/j.dsr2.2020.104743
Smith, K. L., C. L. Huffard, P. R. McGill, A. D. Sherman, T. P. Connolly, S. Von Thun, L. A. Kuhnz. 2020. Gelatinous zooplankton abundance and benthic boundary layer currents in the abyssal Northeast Pacific: A 3-yr time series study. Deep Sea Research II: Topical Studies in Oceanography, 173, 104654. https://doi.org/10.1016/j.dsr2.2019.104654
Connolly, T. P. and A. R. Kirincich. 2019. High-resolution observations of subsurface fronts and alongshore bottom temperature variability over the inner shelf, Journal of Geophysical Research: Oceans. 124, 593–614. https://doi.org/10.1029/2018JC014454
Manzer, C. R.*, T. P. Connolly, E. McPhee-Shaw, G. J. Smith. 2019. Physical factors influencing phytoplankton abundance in southern Monterey Bay, Continental Shelf Research, 180, 1-13. https://doi.org/10.1016/j.csr.2019.04.007
Hickey, B., S. Geier, N. Kachel, S. Ramp, P. M. Kosro and T. P. Connolly. 2016. Alongcoast structure and interannual variability of seasonal midshelf water properties and velocity in the Northern California Current System. Journal of Geophysical Research: Oceans, 121, 7408-7430, http://dx.doi.org/10.1002/2015JC011424
Siedlecki, S. A., N. S. Banas, K. A. Davis, S. N. Giddings, B. M. Hickey, P. MacCready, T. P. Connolly, and S. L. Geier, 2015. Seasonal and interannual oxygen variability on the Washington and Oregon continental shelves. Journal of Geophysical Research: Oceans, 120, 608-633, http://dx.doi.org/10.1002/2014JC010254
Connolly, T. P. and S. J. Lentz, 2014. Interannual variability of wintertime temperature on the inner continental shelf of the Middle Atlantic Bight. Journal of Geophysical Research: Oceans, 119, 6269-6285, http://dx.doi.org/10.1002/2014JC010153
Connolly, T. P., B. M. Hickey, I. Shulman, and R. E. Thomson. 2014. Coastal trapped waves, alongshore pressure gradients, and the California Undercurrent. Journal of Physical Oceanography, 44, 319–342, http://dx.doi.org/10.1175/JPO-D-13-095.1
Connolly, T. P. and B. M. Hickey. 2014. Regional impact of submarine canyons during seasonal upwelling. Journal of Geophysical Research: Oceans, 119, 953–975, http://dx.doi.org/10.1002/2013JC009452
Giddings, S. N., P. MacCready, B. M. Hickey, N. S. Banas, K. A. Davis, S. A. Siedlecki, V. L. Trainer, R. Kudela, N. Pelland, and T. P. Connolly, 2014. Hindcasts of potential harmful algal bloom transport on the Pacific Northwest coast. Journal of Geophysical Research: Oceans, 119, 2439–2461, http://dx.doi.org/10.1002/2013JC009622
Hickey, B. M., V. L. Trainer, P. M. Kosro, N. G. Adams, T. P. Connolly, N. B. Kachel, and S. L. Geier. 2013. A springtime source of toxic Pseudo-nitzschia cells on razor clam beaches in the Pacific Northwest. Harmful Algae, 25, 1–14, http://dx.doi.org/10.1016/j.hal.2013.01.006
Connolly, T. P., B. M. Hickey, S. L. Geier, and W. P. Cochlan, 2010. Processes influencing seasonal hypoxia in the northern California Current System, Journal of Geophysical Research: Oceans, 115, C03021, http://dx.doi.org/10.1029/2009JC005283
Other publications
Connolly, T. P., 2013. Increasing occurrence of coastal hypoxia and anoxia. In: Miller, I.M., Shishido, C., Antrim, L, and Bowlby, E.C. Climate Change and the Olympic Coast National Marine Sanctuary: Interpreting Potential Futures. Marine Sanctuaries Conservation Series ONMS-13-01. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD, 50–60. sanctuaries.noaa.gov/science/conservation/cc_ocnms.html
* - graduate student author