{"id":91,"date":"2015-12-30T21:06:23","date_gmt":"2015-12-31T05:06:23","guid":{"rendered":"https:\/\/physoce.mlml.calstate.edu\/?page_id=91"},"modified":"2025-08-22T15:29:18","modified_gmt":"2025-08-22T22:29:18","slug":"publications","status":"publish","type":"page","link":"https:\/\/mlml.sjsu.edu\/physoce\/people\/tconnolly\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Publications<\/h2>\n<\/div>\n

Peer-reviewed journal articles<\/h4>\n

Connolly, T. P.<\/strong> (2025). Nonlinear dynamics over the inner shelf and in the surface boundary layer during coastal upwelling, Journal of Physical Oceanography, <\/em>55, 695\u2013715, https:\/\/doi.org\/10.1175\/JPO-D-24-0042.1<\/a><\/p>\n

Ruhl, H. A., C. L. Huffard, M. Messi\u00e9, T. P.<\/strong> Connolly<\/strong>, T. Soltwedel, F. Wenzh\u00f6fer, R. J. Johnson, N. R. Bates, S. Hartman, A. Flohr, E. W. Mawji, D. M. Karl, J. Potemra, F. Santiago-Mandujano, T. Ross, and K. L. Smith (2025). Decadal change in deep-ocean dissolved oxygen in the North Atlantic Ocean and North Pacific Ocean. Deep Sea Research Part I: Oceanographic Research Papers<\/em>, 104534. https:\/\/doi.org\/10.1016\/j.dsr.2025.104534<\/a><\/p>\n

Plume, G., R. K. Walter, I. Cobb, M. Dalsin, P. L. F. Mazzini, N. P. Shunk, I. Robbins, T. P. Connolly<\/strong> (2025). Vertical structure of subsurface marine heatwaves in a shallow nearshore upwelling system, Scientific Reports,<\/em> 15, 1, 6353. https:\/\/doi.org\/10.1038\/s41598-025-90565-4<\/a><\/p>\n

Smith, K. L., M. Messi\u00e9,\u00a0T. P. Connolly<\/strong>, C. L. Huffard (2022) Decadal time-series depletion of dissolved oxygen at abyssal depths in the Northeast Pacific, Geophysical Research Letters<\/em>, 49, e2022GL101018. doi:10.1029\/2022GL101018 Link to article<\/a><\/p>\n

Walter, R. K., S. A. Huie, J. C. P. Abraham, A. Pasulka, K. A. Davis, T. P. Connolly<\/strong>, P. L. F. Mazzini, I. Robbins (2022) Seasonal controls on nearshore dissolved oxygen variability and hypoxia in a coastal embayment, Estuarine, Coastal and Shelf Science<\/em>, 278, 108123. doi:10.101\/j.ecss.2022.108123 Link to article<\/a><\/p>\n

Connolly, T. P.<\/strong> and S. J. Lentz (2021) Observations of nonlinear momentum fluxes over the inner continental shelf. Journal of Marine Research, <\/em>79(1), 27-66. Link to article<\/a><\/p>\n

Smith, K. L., A. D. Sherman, P. R. McGill, R. G. Henthorn, J. Ferreira, T. P. Connolly<\/strong>, C. L. Huffard (2021) Abyssal Benthic Rover, an autonomous vehicle for long-term monitoring of deep-ocean processes. Science Robotics<\/i> 6(60), eabl4925. doi:10.1126\/scirobotics.abl4925 Link to article<\/a><\/p>\n

Connolly, T. P.<\/strong>, P. R. McGill, R. G. Henthorn, D. A. Burrier*, C. Michaud* (2020) Near-bottom currents at Station M in the abyssal Northeast Pacific. Deep Sea Research II: Topical Studies in<\/em> Oceanography<\/em>, 173, 104743. doi:10.1016\/j.dsr2.2020.104743 Link to article<\/a>, Link to full text<\/a><\/p>\n

Smith, K. L., C. L. Huffard, P. R. McGill, A. D. Sherman, T. P. Connolly<\/strong>, S. Von Thun, L. A. Kuhnz (2020) Gelatinous zooplankton abundance and benthic boundary layer currents in the abyssal Northeast Pacific: A 3-yr time series study. Deep Sea Research II: Topical Studies in<\/em> Oceanography<\/em>, 173, 104654.\u00a0 doi:10.1016\/j.dsr2.2019.104654 Link to article<\/a>
\n<\/em><\/p>\n

Connolly, T. P. <\/strong>and A. R. Kirincich (2019) High-resolution observations of subsurface fronts and alongshore bottom temperature variability over the inner shelf, Journal of Geophysical Research: Oceans<\/em>. 124, 593\u2013614. doi:10.1029\/2018JC014454 Link to article<\/a><\/span><\/p>\n

Manzer, C. R.*, T. P.<\/strong> Connolly<\/strong>, E. McPhee-Shaw, G. J. Smith (2019) Physical factors influencing phytoplankton abundance in southern Monterey Bay, Continental Shelf Research<\/em>, 180, 1-13. doi:10.1016\/j.csr.2019.04.007 Link to article<\/a>, Link to full text<\/a><\/p>\n

Hickey, B., S. Geier,\u00a0N. Kachel,\u00a0S. Ramp, P. M. Kosro and T. P. Connolly<\/strong> (2016) Alongcoast structure and interannual variability of seasonal midshelf water properties and velocity in the Northern California Current System. Journal of Geophysical Research: Oceans<\/em>, 121, 7408-7430, doi:10.1002\/2015JC011424 Link to article<\/a><\/p>\n

Siedlecki, S. A., N. S. Banas, K. A. Davis, S. N. Giddings, B. M. Hickey, P. MacCready, T. P. Connolly<\/strong>, and S. L. Geier (2015) Seasonal and interannual oxygen variability on the Washington and Oregon continental shelves. Journal of Geophysical Research: Oceans,<\/em> 120, 608-633, doi:10.1002\/2014JC010254 Link to article<\/a><\/p>\n

Connolly, T. P.<\/strong> and S. J. Lentz (2014) Interannual variability of wintertime temperature on the inner continental shelf of the Middle Atlantic Bight. Journal of Geophysical Research: Oceans<\/em>, 119<\/em>, 6269-6285, doi:10.1002\/2014JC010153 Link to article<\/a><\/p>\n

Connolly, T. P.<\/strong>, B. M. Hickey, I. Shulman, and R. E. Thomson (2014) Coastal trapped waves, alongshore pressure gradients, and the California Undercurrent. Journal of Physical Oceanography<\/em>, 44<\/em>, 319\u2013342, doi:10.1175\/JPO-D-13-095.1 Link to article<\/a><\/p>\n

Connolly, T. P.<\/strong> and B. M. Hickey (2014) Regional impact of submarine canyons during seasonal upwelling. Journal of Geophysical Research: Oceans<\/em>, 119<\/em>, 953\u2013975, doi:10.1002\/2013JC009452 Link to article<\/a><\/p>\n

Giddings, S. N., P. MacCready, B. M. Hickey, N. S. Banas, K. A. Davis, S. A. Siedlecki, V. L. Trainer, R. Kudela, N. Pelland, and T. P. Connolly<\/strong> (2014) Hindcasts of potential harmful algal bloom transport on the Pacific Northwest coast. Journal of Geophysical Research: Oceans<\/em>, 119<\/em>, 2439\u20132461, doi:10.1002\/2013JC009622 Link to article<\/a><\/p>\n

Hickey, B. M., V. L. Trainer, P. M. Kosro, N. G. Adams, T. P. Connolly<\/strong>, N. B. Kachel, and S. L. Geier. 2013. A springtime source of toxic Pseudo-nitzschia<\/em> cells on razor clam beaches in the Pacific Northwest. Harmful Algae, 25<\/em>, 1\u00ad\u00ad\u201314, doi:10.1016\/j.hal.2013.01.006 Link to article<\/a>, Link to full text<\/a><\/p>\n

Connolly, T. P.<\/strong>, B. M. Hickey, S. L. Geier, and W. P. Cochlan, 2010. Processes influencing seasonal hypoxia in the northern California Current System, Journal of Geophysical Research: Oceans<\/em>, 115<\/em>, C03021, doi:10.1029\/2009JC005283 Link to article<\/a><\/p>\n

Other publications<\/h4>\n

Connolly, T. P.<\/strong>, 2013. Increasing occurrence of coastal hypoxia and anoxia. In: Miller, I.M., Shishido, C., Antrim, L, and Bowlby, E.C. Climate Change and the Olympic Coast National Marine Sanctuary: Interpreting Potential Futures. Marine Sanctuaries Conservation Series ONMS-13-01. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD, 50\u201360. sanctuaries.noaa.gov\/science\/conservation\/cc_ocnms.html<\/a><\/p>\n

* – graduate student author<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Publications Peer-reviewed journal articles Connolly, T. P. (2025). Nonlinear dynamics over the inner shelf and in the surface boundary layer during coastal upwelling, Journal of Physical Oceanography, 55, 695\u2013715, https:\/\/doi.org\/10.1175\/JPO-D-24-0042.1 Ruhl, H. A., C. L. Huffard, M. Messi\u00e9, T. P. Connolly, T. Soltwedel, F. Wenzh\u00f6fer, R. J. Johnson, N. R. Bates, S. Hartman, A. Flohr, […]<\/p>\n","protected":false},"author":11,"featured_media":0,"parent":18,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"categories":[],"tags":[],"class_list":["post-91","page","type-page","status-publish","hentry"],"distributor_meta":false,"distributor_terms":false,"distributor_media":false,"distributor_original_site_name":"Physical Oceanography","distributor_original_site_url":"https:\/\/mlml.sjsu.edu\/physoce","push-errors":false,"_links":{"self":[{"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/pages\/91","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/users\/11"}],"replies":[{"embeddable":true,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/comments?post=91"}],"version-history":[{"count":47,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/pages\/91\/revisions"}],"predecessor-version":[{"id":1199,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/pages\/91\/revisions\/1199"}],"up":[{"embeddable":true,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/pages\/18"}],"wp:attachment":[{"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/media?parent=91"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/categories?post=91"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/mlml.sjsu.edu\/physoce\/wp-json\/wp\/v2\/tags?post=91"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}